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Ligand · 5Z9

5Z9 · (2R)-2-methyl-2-oxidanyl-butanenitrile

5Z9, (2R)-2-methyl-2-oxidanyl-butanenitrile (C5 H9 N O, 99.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
5Z9
Formula
C5 H9 N O
Class
ligand
Structures
2
PDB entries
1

Binding sites

5Z9 in 2 structures; the first of them:

  • 7VB6 · Crystal structure of hydroxynitrile lyase from Linum usitatissium complexed with… · 5Z9 A505 · binds CYS63, THR65, HIS85, THR111, LYS162, LEU163, CYS199, GLU323 and 3 more
  • 7VB6 · Crystal structure of hydroxynitrile lyase from linum usitatissium complexed with… · 5Z9 A505 · binds CYS63, THR65, HIS85, THR111, LEU163, CYS199, GLU323

Residues it binds most

CYS 8, THR 8, LEU 8, GLU 8, HIS 8, PHE 5, LYS 5, VAL 5 (residue and the binding sites it lines).

Found with

  • NAD · Nicotinamide-adenine-dinucleotide
  • MG · Magnesium ion
  • ZN · Zinc ion
  • BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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