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Ligand · 5YM

5YM · (Z)-N-(2-hydroxyethyl)octadec-9-enamide

5YM, (Z)-N-(2-hydroxyethyl)octadec-9-enamide (C20 H39 N O2, 325.5 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
5YM
Formula
C20 H39 N O2
Class
ligand
Structures
3
PDB entries
2

Binding sites

5YM in 3 structures; the first of them:

  • 7V7W · Crystal Structure of the Heterodimeric HIF-3a:ARNT Complex with oleoylethanolamide (OEA) · 5YM B401 · binds PHE239, SER241, HIS243, MET247, PHE249, ILE256, VAL259, ALA272 and 13 more
  • 8X2K · OEA bound GPR3-Gs complex structure · 5YM A401 · binds HIS96, VAL113, LEU116, ALA117, PHE120, THR121, ILE124, GLY125 and 10 more
  • 7V7W · Crystal structure of the heterodimeric hif-3A:ARNT complex with oleoylethanolamide (oea) · 5YM B401 · binds PHE239, HIS243, PHE249, VAL259, VAL284, SER287, ILE288, THR299 and 7 more

Residues it binds most

PHE 3, VAL 3, LEU 3, HIS 3, ILE 3, THR 3, ALA 2, SER 2, CYS 2, TYR 2 (residue and the binding sites it lines).

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