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Ligand · 5YL

5YL · 5-(6-D-ribitylamino-2,4(1h,3h)pyrimidinedione-5-yl) pentyl-1-phosphonic acid

5YL, 5-(6-D-ribitylamino-2,4(1h,3h)pyrimidinedione-5-yl) pentyl-1-phosphonic acid (C14 H26 N3 O9 P, 411.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
5YL
Formula
C14 H26 N3 O9 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

5YL in 2 structures; the first of them:

  • 1NQW · Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor… · 5YL A1201 · binds SER20, PHE22, ASN23, PRO54, GLY55, SER56, TRP57, GLU58 and 15 more
  • 1NQW · Crystal structure of lumazine synthase from aquifex aeolicus in complex with inhibitor… · 5YL A1201 · binds SER20, PHE22, ASN23, PRO54, GLY55, SER56, TRP57, GLU58 and 15 more

Residues it binds most

SER 10, PHE 10, ALA 10, GLU 10, GLY 10, ILE 10, THR 10, ARG 10, ASN 10, HIS 10 (residue and the binding sites it lines).

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