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Ligand · 5SD

5SD · 5alpha-androstan-3,17-dione

5SD, 5alpha-androstan-3,17-dione (C19 H28 O2, 288.4 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
5SD
Formula
C19 H28 O2
Class
ligand
Structures
6
PDB entries
3

Binding sites

5SD in 6 structures; the first of them:

  • 1OHS · Crystal structure of 5-3-ketosteroid isomerase mutant Y14F/D38N from pseudomonas… · 5SD A1126 · binds PHE14, LEU18, ASN38, PHE54, TYR55, SER58, LEU63, PHE82 and 9 more
  • 1QYW · Crystal structure of human estrogenic 17beta-hydroxysteroid dehydrogenase complex with… · 5SD A500 · binds VAL143, LEU149, PRO187, TYR218, HIS221, SER222, VAL225, PHE226 and 4 more
  • 4XO6 · Crystal structure of human 3-alpha hydroxysteroid dehydrogenase type 3 in complex with… · 5SD A402 · binds TYR24, VAL54, TYR55, TRP86, HIS117, VAL128, ILE129, TRP227 and 3 more
  • 1OHS · Crystal structure of 5-3-ketosteroid isomerase mutant Y14F/ D38N from pseudomonas… · 5SD A1126 · binds PHE14, LEU18, ASN38, PHE54, TYR55, SER58, LEU63, PHE82 and 9 more
  • 1QYW · Crystal structure of human estrogenic 17BETA-hydroxysteroid dehydrogenase complex with… · 5SD A500 · binds VAL143, LEU149, PRO187, TYR218, HIS221, SER222, VAL225, PHE226 and 4 more
  • 4XO6 · Crystal structure of human 3-alpha hydroxysteroid dehydrogenase type 3 in complex with… · 5SD A402 · binds TYR24, VAL54, TYR55, TRP86, HIS117, VAL128, ILE129, TRP227 and 3 more

Residues it binds most

PHE 10, VAL 10, LEU 10, TYR 10, MET 8, PRO 8, SER 8, ASN 6, ASP 6, ALA 4 (residue and the binding sites it lines).

Found with

  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate
  • GOL · Glycerol
  • AOX · (3Beta,5alpha)-3-Hydroxyandrostan-17-one
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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