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Ligand · 5PV

5PV · 5-phenylvaleric acid

5PV, 5-phenylvaleric acid (C11 H14 O2, 178.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
5PV
Formula
C11 H14 O2
Class
ligand
Structures
3
PDB entries
2

Binding sites

5PV in 3 structures; the first of them:

  • 2AY9 · Aromatic amino acid aminotransferase with 5-phenylvaleric acid · 5PV A414 · binds ILE17, GLY38, THR109, TRP140, ASN142, ASN194, TYR225, LYS258 and 5 more
  • 2AY9 · Aromatic amino acid aminotransferase with 5-phenylvaleric acid · 5PV A414 · binds ILE17, GLY38, THR109, TRP140, ASN142, ASN194, TYR225, LYS258 and 5 more
  • 4LKM · Crystal structure of PLK1 polo-box domain in complex with pl-74 · 5PV B101 · binds TYR417, TYR421, TYR481

Residues it binds most

TYR 5, ASN 4, PHE 4, ARG 4, GLY 4, ILE 4, LYS 4, SER 4, THR 4, TRP 4 (residue and the binding sites it lines).

Found with

  • PLP · Pyridoxal-5'-phosphate
  • ACE · Acetyl group
  • LYT · Butylamine
  • NH2 · Amino group
  • SO4 · Sulfate ion
  • GOL · Glycerol

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