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Ligand · 5OB

5OB · 5-methoxybenzimidazole

5OB, 5-methoxybenzimidazole (C8 H8 N2 O, 148.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
5OB
Formula
C8 H8 N2 O
Class
ligand
Structures
3
PDB entries
2

Binding sites

5OB in 3 structures; the first of them:

  • 6QO6 · Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus… · 5OB A301 · binds PRO83, THR84, PRO85, GLY109, TYR111, VAL131, SER132, ILE133 and 8 more
  • 8I2A · E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization… · 5OB B404 · binds ALA89, GLY92, TRP93, ASN96, ASP127, VAL130, LEU131, ALA89 and 6 more
  • 6QO6 · Crystal structure of trmd, a tRNA-(N1G37) methyltransferase, from mycobacterium abscessus… · 5OB A301 · binds PRO83, THR84, PRO85, TYR111, SER132, ILE133, GLY134, TYR136 and 5 more

Residues it binds most

GLY 5, PRO 4, ALA 5, LEU 5, TYR 4, ASN 4, VAL 3, ILE 4, SER 4, THR 4 (residue and the binding sites it lines).

Found with

  • TYM · Tryptophanyl-5'amp
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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