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Ligand · 5MD

5MD · 2'-deoxy-1-methyl-pseudouridine

5MD, 2'-deoxy-1-methyl-pseudouridine (C10 H14 N2 O5, 242.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
5MD
Formula
C10 H14 N2 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

5MD in 2 structures; the first of them:

  • 1F8Y · Crystal structure analysis of nucleoside 2-deoxyribosyltransferase complexed with… · 5MD A158 · binds TYR7, PHE8, GLY9, ALA10, GLY11, TRP12, PHE13, PRO42 and 12 more
  • 1F8Y · Crystal structure analysis of nucleoside 2- deoxyribosyltransferase complexed with… · 5MD A158 · binds TYR7, PHE8, GLY9, ALA10, GLY11, TRP12, PHE13, PRO42 and 12 more

Residues it binds most

GLY 4, ASP 4, LEU 4, PHE 4, TRP 4, TYR 4, ALA 4, ASN 4, GLN 4, GLU 4 (residue and the binding sites it lines).

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