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Ligand · 5LD

5LD · [(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid

5LD, [(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid (C5 H10 N3 O4 P, 207.1 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues…

Component
5LD
Formula
C5 H10 N3 O4 P
Class
ligand
Structures
8
PDB entries
6

Binding sites

5LD in 8 structures; the first of them:

  • 5DNX · Crystal structure of IGPD from Pyrococcus furiosus in complex with (R)-C348 · 5LD A203 · binds GLU7, HIS52, HIS53, GLU56, ARG76, ARG98, SER171, THR172 and 1 more
  • 5EKW · A. thaliana IGPD2 in complex with the racemate of the triazole-phosphonate inhibitor, C348 · 5LD A404 · binds ARG99, ARG121, SER199, LYS201
  • 5ELW · A. thaliana IGPD2 in complex with the triazole-phosphonate inhibitor, (R)-C348, to 1.36A… · 5LD A303 · binds ARG99, ARG121, SER199, SER200, LYS201
  • 6EZJ · Imidazoleglycerol-phosphate dehydratase · 5LD A402 · binds HIS47, GLN51, LEU107, HIS169, HIS170, GLU173, LYS177, GLU21 and 5 more
  • 6FWH · Acanthamoeba IGPD in complex with R-C348 to 1.7A resolution · 5LD A203 · binds HIS40, LEU100, HIS162, HIS163, GLU166, LYS170, ARG92, ARG114 and 7 more

Residues it binds most

HIS 98, GLU 98, ARG 101, LYS 101, LEU 96, SER 53, THR 51, GLN 48, MET 1, TYR 1 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • MG · Magnesium ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
  • 5DL · [(2S)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid

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