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Ligand · 5JC

5JC · 2,4-dichlorophenol

5JC, 2,4-dichlorophenol (C6 H4 Cl2 O, 163.0 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
5JC
Formula
C6 H4 Cl2 O
Class
ligand
Structures
7
PDB entries
6

Binding sites

5JC in 7 structures; the first of them:

  • 5E1Z · Crystal structure of the organohalide sensing RdhR-CbdbA1625 transcriptional regulator in… · 5JC B201 · binds PHE42, ALA43, HIS46, GLU47, ILE64, PHE66, PHE159
  • 5FS0 · crystal structure of the phenol-responsive sensory domain of the transcription activator… · 5JC A1209 · binds LEU95, GLY98, PRO99, HIS102, VAL110, TYR124, PHE128, TRP130 and 6 more
  • 6I7F · Dehaloperoxidase B from Amphitrite ornata - complex with 2,4-dichlorophenol · 5JC A202 · binds ALA17, PHE21, PHE35, HIS55, THR56, VAL59, PHE60, LEU100
  • 8EJN · Structure of dehaloperoxidase A in complex with 2,4-dichlorophenol · 5JC A202 · binds PHE21, PHE35, TYR38, HIS55, THR56, VAL59, PHE60, LEU100
  • 6I7F · Dehaloperoxidase B from amphitrite ornata - complex with 2,4- dichlorophenol · 5JC A202 · binds ALA17, PHE21, PHE35, HIS55, THR56, VAL59, PHE60, LEU100
  • 7LZK · Dhp B in complex with 2,4-dichlorophenol substrate · 5JC A202 · binds PHE21, PHE35, HIS55, THR56, VAL59, PHE60, LEU100
  • 7LZN · Dhp B in complex with 2,4-dichlorophenol substrate · 5JC A203 · binds PHE21, PHE35, HIS55, THR56, VAL59

Residues it binds most

PHE 13, HIS 13, VAL 12, THR 12, LEU 11, TYR 4, ALA 8, ILE 4, GLY 2, PRO 2 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • ZN · Zinc ion
  • DMS · Dimethyl sulfoxide

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