Ligand · 5DK
5DK · (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine
5DK, (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine (C14 H22 N5 O7 P, 403.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues…
- Component
- 5DK
- Formula
- C14 H22 N5 O7 P
- Class
- ligand
- Structures
- 3
- PDB entries
- 2
Binding sites
5DK in 3 structures; the first of them:
- 5DJ3 · Structure of the PLP-Dependent L-Arginine Hydroxylase MppP with D-Arginine Bound · 5DK A500 · binds ASP27, GLY28, HIS29, SER89, SER90, SER91, PHE115, ILE118 and 13 more
- 8D5D · Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-arginine · 5DK A505 · binds ALA78, LYS80, THR81, GLU99, ASN101, ASN122, ARG169, HIS216 and 18 more
- 5DJ3 · Structure of the plp-dependent L-arginine hydroxylase mppp with D- arginine bound · 5DK A500 · binds ASP27, GLY28, HIS29, SER89, SER90, SER91, PHE115, ILE118 and 13 more
Residues it binds most
ASP 10, SER 8, PHE 10, GLY 10, LYS 10, ILE 10, ARG 10, HIS 10, ASN 10, THR 10 (residue and the binding sites it lines).
Found with
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