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Ligand · 5DI

5DI · alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride

5DI, alpha-D-threo-hexo-2,5-diulo-2,6-pyranosyl fluoride (C6 H9 F O5, 180.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
5DI
Formula
C6 H9 F O5
Class
sugar
Structures
2
PDB entries
1

Binding sites

5DI in 2 structures; the first of them:

  • 4AMW · CRYSTAL STRUCTURE OF THE GRACILARIOPSIS LEMANEIFORMIS ALPHA-1,4- GLUCAN LYASE Covalent… · 5DI D1041 · binds PHE373, ASP412, VAL413, ASN459, TYR513, TRP551, ASP553, MET554 and 5 more
  • 4AMW · Crystal structure of the gracilariopsis lemaneiformis alpha-1,4- glucan lyase covalent… · 5DI D1041 · binds PHE373, ASP412, VAL413, ASN459, TYR513, TRP551, ASP553, MET554 and 5 more

Residues it binds most

ASP 2, PHE 2, TRP 2, ARG 2, ASN 2, HIS 2, MET 2, TYR 2, VAL 2 (residue and the binding sites it lines).

Found with

  • B9D · 5-fluoro-alpha-L-idopyranose
  • GOL · Glycerol

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