GL1X · GenesisL1 explorer

Ligand · 53L

53L · (2r,4s,4as,5s)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4, 4A-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione

53L, (2r,4s,4as,5s)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4, 4A-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione (C17 H18 N4 O6, 374.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1…

Component
53L
Formula
C17 H18 N4 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

53L in 2 structures; the first of them:

  • 5CDO · 3.15A structure of QPT-1 with S.aureus DNA gyrase and DNA · 53L F2101 · binds PTR123, SER84, GLY436, ASP437, LEU457, ARG458, GLY459, DC2012 and 3 more
  • 5CDO · 3.15A structure of qpt-1 with S.AUREUS DNA gyrase and DNA · 53L F2101 · binds PTR123, SER84, GLY436, ASP437, LEU457, ARG458, GLY459, DC2012 and 3 more

Residues it binds most

DC 2, DG 2, GLY 2, ARG 2, ASP 2, LEU 2, PTR 2, SER 2 (residue and the binding sites it lines).

Found with

  • 50M · (2r,4s,4as,5r)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4, 4A-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione
  • 53M · (2r,4s,4as)-4',6'-dihydroxy-2,4-dimethyl-8-nitro-1,2,4, 4A-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidin]-2'-one
  • MN · Manganese (II) ion
  • NA · Sodium ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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