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Ligand · 48Z

48Z · 2-deoxy-2-fluoro-5-O-thiophosphono-alpha-D-arabinofuranose

48Z, 2-deoxy-2-fluoro-5-O-thiophosphono-alpha-D-arabinofuranose (C5 H10 F O6 P S, 248.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
48Z
Formula
C5 H10 F O6 P S
Class
sugar
Structures
4
PDB entries
3

Binding sites

48Z in 4 structures; the first of them:

  • 3ROM · Crystal structure of human CD38 in complex with compound CZ-48 · 48Z A301 · binds TRP125, SER126, ARG127, LEU145, GLU146, TRP189, SER193, SER220 and 3 more
  • 3ROM · Crystal structure of human CD38 in complex with compound cz-48 · 48Z A301 · binds TRP125, SER126, ARG127, LEU145, GLU146, TRP189, SER193, SER220 and 3 more
  • 5DFI · Human APE1 phosphorothioate substrate complex · 48Z P11 · binds GLU96, TYR171, ASN174, ASN212, ALA230, GLY231, PHE266, TRP280 and 3 more
  • 5DG0 · Human APE1 phosphorothioate substrate complex with MN2+ · 48Z P11 · binds GLU96, TYR171, ASN174, ASN212, ALA230, GLY231, PHE266, TRP280 and 3 more

Residues it binds most

SER 4, GLU 6, TRP 6, LEU 6, PHE 6, ARG 4, ASN 2, THR 4, ALA 2, DC 2 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • MN · Manganese (II) ion

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