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Ligand · 40S

40S · 3-methylpentane-1,5-diol

40S, 3-methylpentane-1,5-diol (C6 H14 O2, 118.2 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
40S
Formula
C6 H14 O2
Class
ligand
Structures
12
PDB entries
6

Binding sites

40S in 12 structures; the first of them:

  • 3X2G · X-ray structure of PcCel45A N92D apo form at 100K · 40S A201 · binds ASN70
  • 3X2H · X-ray structure of PcCel45A N92D with cellopentaose at 95K. · 40S A208 · binds GLN7, GLN8, ALA9, TRP167, PRO168
  • 3X2I · X-ray structure of PcCel45A N92D apo form at 298K. · 40S A201 · binds GLY4, TYR5, VAL6, THR100, PRO103
  • 3X2J · X-ray structure of PcCel45A D114N apo form at 95K. · 40S A201 · binds TYR18, ALA36, ASP85, LEU86, CYS87, PRO88, ASN92, ASN114
  • 3X2K · X-ray structure of PcCel45A D114N with cellopentaose at 95K. · 40S A211 · binds SER23, LEU153, TRP154
  • 3X2L · X-ray structure of PcCel45A apo form at 95K. · 40S A201 · binds ALA29, ALA30, SER31, THR119
  • 3X2G · X-ray structure of PCCEL45A N92D apo form at 100K · 40S A201 · binds ASN70
  • 3X2H · X-ray structure of PCCEL45A N92D with cellopentaose at 95K. · 40S A208 · binds GLN7, GLN8, ALA9, TRP167, PRO168
  • 3X2I · X-ray structure of PCCEL45A N92D apo form at 298K. · 40S A201 · binds GLY4, TYR5, VAL6, THR100, PRO103
  • 3X2J · X-ray structure of PCCEL45A D114N apo form at 95K. · 40S A201 · binds TYR18, ALA36, ASP85, LEU86, CYS87, PRO88, ASN92, ASN114
  • 3X2K · X-ray structure of PCCEL45A D114N with cellopentaose at 95K. · 40S A211 · binds SER23, LEU153, TRP154
  • 3X2L · X-ray structure of PCCEL45A apo form at 95K. · 40S A201 · binds ALA29, ALA30, SER31, THR119

Residues it binds most

ALA 20, PRO 16, PHE 8, THR 16, GLY 16, SER 14, GLN 8, LYS 8, ASN 4, ASP 6 (residue and the binding sites it lines).

Found with

  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
  • BGC · beta-D-glucopyranose
  • GLC · alpha-D-glucopyranose

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