GL1X · GenesisL1 explorer

Ligand · 3ZD

3ZD · (2R)-N-[(2S)-1-[(4-carbamimidoylphenyl)methylamino]-1-oxidanylidene-propan-2-yl]-3-phenyl-2-[(phenylmethyl)sulfonylamino]propanamide

3ZD, (2R)-N-[(2S)-1-[(4-carbamimidoylphenyl)methylamino]-1-oxidanylidene-propan-2-yl]-3-phenyl-2-[(phenylmethyl)sulfonylamino]propanamide (C27 H31 N5 O4 S, 521.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
3ZD
Formula
C27 H31 N5 O4 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

3ZD in 2 structures; the first of them:

  • 4UFE · Thrombin in complex with (2R)-2-(benzylsulfonylamino)-N-(2-((4… · 3ZD H1249 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, GLU146, ILE174 and 13 more
  • 4UFE · Thrombin in complex with (2R)-2-(benzylsulfonylamino)-N-(2-((4… · 3ZD H1249 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, GLU146, ILE174 and 13 more

Residues it binds most

GLU 2, GLY 2, CYS 2, SER 2, TRP 2, ALA 2, ASN 2, ASP 2, HIS 2, ILE 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion

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