GL1X · GenesisL1 explorer

Ligand · 3YN

3YN · [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl (2R,4R,6R)-4-hydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl dihydrogen diphosphate

3YN, [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl (2R,4R,6R)-4-hydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl dihydrogen diphosphate (C16 H24 N2 O14 P2, 530.3 g/mol), in the MolNFT…

Component
3YN
Formula
C16 H24 N2 O14 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

3YN in 2 structures; the first of them:

  • 4RVH · Crystal structure of MtmC in complex with SAH and TDP-4-keto-D-olivose · 3YN A503 · binds ASP34, TYR77, TYR79, SER84, HIS178, HIS182, TYR223, GLU225 and 18 more
  • 4RVH · Crystal structure of mtmc in complex with sah and tdp-4-keto-D-olivose · 3YN A503 · binds ASP34, TYR77, TYR79, SER84, HIS178, HIS182, TYR223, GLU225 and 18 more

Residues it binds most

TYR 2, HIS 2, ALA 2, LYS 2, ASP 2, THR 2, ASN 2, CSO 2, GLU 2, GLY 2 (residue and the binding sites it lines).

Found with

  • SAH · S-adenosyl-L-homocysteine
  • ZN · Zinc ion

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