GL1X · GenesisL1 explorer

Ligand · 3VL

3VL · methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate

3VL, methyl (1R,2R,4S)-2-ethyl-2,5,7-trihydroxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate (C30 H35 N O10, 569.6 g/mol), in the MolNFT structures on…

Component
3VL
Formula
C30 H35 N O10
Class
ligand
Structures
5
PDB entries
3

Binding sites

3VL in 5 structures; the first of them:

  • 7OWB · Chimeric carminomycin-4-O-methyltransferase (DnrK) with a region from 10-hydroxylase CalMB · 3VL A401 · binds TRP106, VAL113, PHE142, TYR143, PHE156, LEU160, CYS162, ASP163 and 14 more
  • 7OY1 · DnrK mutant RTCR · 3VL A401 · binds TRP106, VAL113, PHE142, TYR143, PHE156, MET160, ALA161, THR162 and 15 more
  • 7PHD · Chimeric carminomycin-4-O-methyltransferase (DnrK) with a region from 10-decarboxylase… · 3VL A406 · binds TRP106, VAL113, PHE142, TYR143, PHE156, LEU160, CYS162, ASP163 and 11 more
  • 7OWB · Chimeric carminomycin-4-O-methyltransferase (dnrk) with a region from 10-hydroxylase calmb · 3VL A401 · binds TRP106, PHE156, LEU160, ASP163, ALA167, PHE168, PHE253, ASN257 and 7 more
  • 7OY1 · Dnrk mutant rtcr · 3VL A401 · binds TRP106, TYR143, PHE156, MET160, THR162, PHE253, ASN257, PHE297 and 6 more

Residues it binds most

PHE 8, LEU 8, MET 8, VAL 7, ARG 8, ASN 8, TRP 8, TYR 7, ASP 6, HIS 6 (residue and the binding sites it lines).

Found with

  • SAH · S-adenosyl-L-homocysteine
  • SAM · S-adenosylmethionine
  • SO4 · Sulfate ion
  • GOL · Glycerol

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