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Ligand · 3R2

3R2 · 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine

3R2, 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine (C17 H28 N2 O13 P2, 530.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4…

Component
3R2
Formula
C17 H28 N2 O13 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

3R2 in 4 structures; the first of them:

  • 4RIF · Landomycin Glycosyltransferase LanGT2, carbasugar substrate complex · 3R2 A401 · binds SER10, ALA12, THR13, PHE15, TRP136, ASP137, ASN195, THR216 and 18 more
  • 4RIH · Chimeric Glycosyltransferase LanGT2S8Ac, carbasugar substrate complex · 3R2 A401 · binds ALA12, THR13, PHE15, TRP136, ASP137, ASN195, GLY196, THR216 and 18 more
  • 4RIF · Landomycin glycosyltransferase LANGT2, carbasugar substrate complex · 3R2 A401 · binds SER10, ALA12, THR13, PHE15, TRP136, ASP137, ASN195, THR216 and 18 more
  • 4RIH · Chimeric glycosyltransferase LANGT2S8AC, carbasugar substrate complex · 3R2 A401 · binds ALA12, THR13, PHE15, TRP136, ASP137, ASN195, GLY196, THR216 and 18 more

Residues it binds most

GLY 8, THR 8, ALA 8, LEU 8, PHE 8, TRP 8, VAL 8, SER 8, ARG 8, ASN 8 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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