Ligand · 3PD
3PD · 2-amino-9-(2-deoxy-3-O-phosphonopentofuranosyl)-1,9-dihydro-6H-purin-6-one
3PD, 2-amino-9-(2-deoxy-3-O-phosphonopentofuranosyl)-1,9-dihydro-6H-purin-6-one (C10 H14 N5 O7 P, 347.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å…
- Component
- 3PD
- Formula
- C10 H14 N5 O7 P
- Class
- ligand
- Structures
- 4
- PDB entries
- 2
Binding sites
3PD in 4 structures; the first of them:
- 2DJH · Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 · 3PD A117 · binds LYS25, GLN29, ARG33, LYS60, TYR81, GLN93, ASP99, GLY101 and 4 more
- 3VJ7 · Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 R33Q mutant · 3PD A1 · binds LYS25, GLN29, LYS60, TYR81, GLN93, GLY101, TRP102, VAL103 and 2 more
- 2DJH · Crystal structure of the carboxy-terminal ribonuclease domain of colicin E5 · 3PD A117 · binds LYS25, GLN29, ARG33, LYS60, TYR81, GLN93, ASP99, GLY101 and 4 more
- 3VJ7 · Crystal structure of the carboxy-terminal ribonuclease domain of colicin E5 R33Q mutant · 3PD A1 · binds LYS25, GLN29, LYS60, TYR81, GLN93, GLY101, TRP102, VAL103 and 2 more
Residues it binds most
ASP 4, GLN 4, LYS 4, GLY 4, TRP 4, TYR 4, VAL 4, ARG 2 (residue and the binding sites it lines).
Found with
- UM3 · 2'-deoxyuridine 3'-monophosphate
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