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Ligand · 3M5

3M5 · 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide

3M5, 3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide (C14 H23 N O4, 269.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
3M5
Formula
C14 H23 N O4
Class
ligand
Structures
2
PDB entries
2

Binding sites

3M5 in 2 structures; the first of them:

  • 4RDY · Crystal structure of VmoLac bound to 3-oxo-C10 AHL · 3M5 A403 · binds HIS23, HIS25, LEU28, TYR98, TYR100, KCX138, HIS171, HIS200 and 14 more
  • 6MVN · LasR LBD L130F:3OC10HSL complex · 3M5 A301 · binds LEU36, GLY38, LEU39, LEU40, TYR47, ALA50, ILE52, TYR56 and 15 more

Residues it binds most

TYR 4, LEU 4, TRP 4, VAL 4, HIS 2, ALA 2, THR 4, ILE 3, ASP 4, GLY 2 (residue and the binding sites it lines).

Found with

  • CO · Cobalt (II) ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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