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Ligand · 3JD

3JD · 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide

3JD, 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide (C19 H20 N4 O, 320.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
3JD
Formula
C19 H20 N4 O
Class
ligand
Structures
4
PDB entries
4

Binding sites

3JD in 4 structures; the first of them:

  • 8TNC · De novo designed protein binds poly ADP ribose polymerase inhibitors (PARPi) - holo… · 3JD A201 · binds ILE21, LEU24, ALA25, THR28, ASP29, GLU32, GLN54, VAL57 and 9 more
  • 7F43 · PARP15 catalytic domain in complex with niraparib · 3JD B701 · binds PHE558, HIS559, GLY560, CYS578, ALA579, GLY580, ASN582, ALA583 and 6 more
  • 7KK5 · Structure of the catalytic domain of PARP1 in complex with niraparib · 3JD A9001 · binds GLN759, VAL762, ASP766, HIS862, GLY863, GLY888, TYR889, TYR896 and 6 more
  • 7KKP · Structure of the catalytic domain of tankyrase 1 in complex with niraparib · 3JD A1402 · binds HIS1184, GLY1185, TYR1213, ALA1215, LYS1220, SER1221, TYR1224, ILE1228 and 1 more

Residues it binds most

TYR 7, ALA 10, GLY 10, VAL 8, PHE 9, ASP 7, GLU 9, GLN 7, HIS 7, SER 7 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • ZN · Zinc ion

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