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Ligand · 39Y

39Y · (2E,5S)-5-methylhept-2-enoic acid

39Y, (2E,5S)-5-methylhept-2-enoic acid (C8 H14 O2, 142.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
39Y
Formula
C8 H14 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

39Y in 2 structures; the first of them:

  • 4U0G · Crystal Structure of M. tuberculosis ClpP1P2 bound to ADEP and agonist · 39Y c101 · binds LEU61, VAL62, SER65, TYR95, ARG97, LYS35, LEU36, GLU39 and 5 more
  • 4U0G · Crystal structure of M. tuberculosis CLPP1P2 bound to adep and agonist · 39Y c1 · binds LEU61, VAL62, SER65, TYR95, ARG97, LYS35, LEU36, GLU39 and 5 more

Residues it binds most

LEU 28, TYR 28, GLU 28, ILE 28, LYS 28, PRO 28, SER 28, THR 28, VAL 28, WFP 28 (residue and the binding sites it lines).

Found with

  • ZIL · N-[(benzyloxy)carbonyl]-L-isoleucyl-L-leucine
  • SO4 · Sulfate ion
  • DMS · Dimethyl sulfoxide
  • 3A0 · (2S,4S)-4-methylpiperidine-2-carboxylic acid

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