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Ligand · 2YN

2YN · (1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]

2YN, (1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)] (C6 H20 O30 P8, 820.0 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
2YN
Formula
C6 H20 O30 P8
Class
ligand
Structures
2
PDB entries
1

Binding sites

2YN in 2 structures; the first of them:

  • 4Q4D · Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate… · 2YN A402 · binds LYS53, LYS54, SER102, LYS103, GLU192, HIS194, LYS214, LYS248 and 9 more
  • 4Q4D · Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate… · 2YN A402 · binds LYS53, LYS54, SER102, LYS103, GLU192, HIS194, LYS214, LYS248 and 9 more

Residues it binds most

LYS 2, ARG 2, PHE 2, SER 2, GLU 2, GLY 2, HIS 2, TYR 2 (residue and the binding sites it lines).

Found with

  • ANP · Phosphoaminophosphonic acid-adenylate ester
  • MG · Magnesium ion

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