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Ligand · 2YJ

2YJ · N~5~-D-lysyl-L-ornithine

2YJ, N~5~-D-lysyl-L-ornithine (C11 H24 N4 O3, 260.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
2YJ
Formula
C11 H24 N4 O3
Class
ligand
Structures
2
PDB entries
1

Binding sites

2YJ in 2 structures; the first of them:

  • 4Q3E · PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+ · 2YJ A904 · binds PRO52, VAL53, SER55, ILE60, GLY61, PHE63, SER64, ALA103 and 5 more
  • 4Q3E · Pyld cocrystallized with L-ornithine-nd-D-lysine and NAD+ · 2YJ A904 · binds PRO52, VAL53, SER55, ILE60, GLY61, PHE63, SER64, ALA103 and 5 more

Residues it binds most

ILE 4, ASP 4, SER 4, PRO 4, VAL 4, ALA 4, GLY 4, PHE 4, ASN 2 (residue and the binding sites it lines).

Found with

  • NAD · Nicotinamide-adenine-dinucleotide
  • MG · Magnesium ion
  • NA · Sodium ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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