Ligand · 2YG

2YG · N~6~-L-lysyl-L-lysine

2YG, N~6~-L-lysyl-L-lysine (C12 H26 N4 O3, 274.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: 2YG
Formula: C12 H26 N4 O3
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

2YG in 2 structures; the first of them:

4Q3C · PylD cocrystallized with L-Lysine-Ne-L-lysine and NAD+ · 2YG A904 · binds ALA2, LEU3, LEU4, PRO52, VAL53, GLY58, ILE59, ILE60 and 8 more
4Q3C · Pyld cocrystallized with L-lysine-ne-L-lysine and NAD+ · 2YG A904 · binds ALA2, LEU3, LEU4, PRO52, VAL53, GLY58, ILE59, ILE60 and 8 more

Residues it binds most

LEU 8, ALA 8, ILE 8, PHE 8, ASP 8, PRO 8, VAL 8, ASN 8, GLY 8 (residue and the binding sites it lines).

Found with

NAD · Nicotinamide-adenine-dinucleotide
MG · Magnesium ion
NA · Sodium ion
EDO · 1,2-ethanediol
GOL · Glycerol
PEG · Di(hydroxyethyl)ether

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