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Ligand · 2YF

2YF · N~6~-[(2R)-2,3,4,5-tetrahydropyridin-2-ylcarbonyl]-L-lysine

2YF, N~6~-[(2R)-2,3,4,5-tetrahydropyridin-2-ylcarbonyl]-L-lysine (C12 H21 N3 O3, 255.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
2YF
Formula
C12 H21 N3 O3
Class
ligand
Structures
2
PDB entries
1

Binding sites

2YF in 2 structures; the first of them:

  • 4Q3B · PylD cocrystallized with L-Lysine-Ne-D-lysine and NAD+ · 2YF A904 · binds LEU3, LEU4, VAL51, PRO52, VAL53, GLY58, ILE59, ILE60 and 8 more
  • 4Q3B · Pyld cocrystallized with L-lysine-ne-D-lysine and NAD+ · 2YF A904 · binds LEU3, LEU4, VAL51, PRO52, VAL53, GLY58, ILE59, ILE60 and 8 more

Residues it binds most

LEU 8, ASP 8, ILE 8, PHE 8, PRO 8, VAL 8, ALA 8, ASN 8, GLY 8 (residue and the binding sites it lines).

Found with

  • NAI · 1,4-dihydronicotinamide adenine dinucleotide
  • MG · Magnesium ion
  • NA · Sodium ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • PEG · Di(hydroxyethyl)ether

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