Ligand · 2YD

2YD · (5R,6R,7S,8R,9R,12S,13E,16S,18S,19R,20aR)-4,7,19-trihydroxy-2,6,8,12,14,16,18-heptamethyl-6,7,8,9,10,11,12,15,16,17,18,19,20,20a-tetradecahydro-1,19:5,9-diepoxybenzo[18]annulen-3(5H)-one

2YD, (5R,6R,7S,8R,9R,12S,13E,16S,18S,19R,20aR)-4,7,19-trihydroxy-2,6,8,12,14,16,18-heptamethyl-6,7,8,9,10,11,12,15,16,17,18,19,20,20a-tetradecahydro-1,19:5,9-diepoxybenzo[18]annulen-3(5H)-one (C29 H44 O6, 488.7 g/mol), in the MolNFT…

Component: 2YD
Formula: C29 H44 O6
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

2YD in 2 structures; the first of them:

4Q1S · Yeast 20S proteasome in Complex with Kendomycin · 2YD H301 · binds ALA136, VAL137, SER140, HIS141, ASP157, ALA161, PRO153, LEU154 and 5 more
4Q1S · Yeast 20S proteasome in complex with kendomycin · 2YD H301 · binds ALA136, VAL137, SER140, HIS141, ASP157, ALA161, PRO153, LEU154 and 5 more

Residues it binds most

ALA 4, VAL 4, LYS 4, ASN 4, ASP 4, GLU 4, HIS 4, LEU 4, PRO 4, SER 4 (residue and the binding sites it lines).

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