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Ligand · 2LM

2LM · (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]-4-(methylsulfanyl)butanoic acid

2LM, (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]-4-(methylsulfanyl)butanoic acid (C13 H19 N2 O7 P S, 378.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding…

Component
2LM
Formula
C13 H19 N2 O7 P S
Class
ligand
Structures
4
PDB entries
2

Binding sites

2LM in 4 structures; the first of them:

  • 3AEL · Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1… · 2LM B2003 · binds SER582, GLY583, MET584, ILE587, TYR608, GLU651, ASN655, ASP680 and 15 more
  • 3AEM · Reaction intermediate structure of Entamoeba histolytica methionine gamma-lyase 1… · 2LM A2001 · binds SER82, GLY83, MET84, ILE87, TYR108, GLU151, ASN155, ASP180 and 15 more
  • 3AEL · Reaction intermediate structure of entamoeba histolytica methionine gamma-lyase 1… · 2LM B2003 · binds SER582, GLY583, MET584, ILE587, TYR608, GLU651, ASN655, ASP680 and 15 more
  • 3AEM · Reaction intermediate structure of entamoeba histolytica methionine gamma-lyase 1… · 2LM A2001 · binds SER82, GLY83, MET84, ILE87, TYR108, GLU151, ASN155, ASP180 and 15 more

Residues it binds most

SER 12, ARG 12, GLY 12, ILE 12, PHE 12, THR 12, TYR 12, LEU 12, ASN 12, ASP 12 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • GOL · Glycerol
  • 4LM · (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid
  • MEE · Methanethiol
  • MET · Methionine

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