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Ligand · 2DT

2DT · 3'-deoxythymidine-5'-monophosphate

2DT, 3'-deoxythymidine-5'-monophosphate (C10 H15 N2 O7 P, 306.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
2DT
Formula
C10 H15 N2 O7 P
Class
ligand
Structures
8
PDB entries
4

Binding sites

2DT in 8 structures; the first of them:

  • 1NN0 · Crystal structure of human thymidylate kinase with ddTMP and ADP · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN1 · Crystal structure of human thymidylate kinase with ddTMP and AppNHp · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN3 · Crystal structure of human thymidylate kinase with d4TMP + ADP · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN5 · Crystal structure of human thymidylate kinase with d4TMP + AppNHp · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN0 · Crystal structure of human thymidylate kinase with ddtmp and ADP · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN1 · Crystal structure of human thymidylate kinase with ddtmp and appnhp · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN3 · Crystal structure of human thymidylate kinase with D4TMP + ADP · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more
  • 1NN5 · Crystal structure of human thymidylate kinase with D4TMP + appnhp · 2DT A301 · binds PHE42, PRO43, ARG45, LEU57, PHE72, ARG76, ARG97, TYR98 and 5 more

Residues it binds most

ARG 8, PHE 8, TYR 8, GLU 8, GLY 8, LEU 8, PRO 8, SER 8 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ADP · Adenosine-5'-diphosphate
  • ANP · Phosphoaminophosphonic acid-adenylate ester

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