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Ligand · 1YD

1YD · 2-amino-9-[(2r,3r,3ar,5s,7as,9r,10r,10ar,12r,14as)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-D:3',2'-J][1,3,7,9, 2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one

1YD, 2-amino-9-[(2r,3r,3ar,5s,7as,9r,10r,10ar,12r,14as)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-D:3',2'-J][1,3,7,9, 2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one (C20 H24…

Component
1YD
Formula
C20 H24 N10 O13 P2
Class
ligand
Structures
1
PDB entries
1

Binding sites

1YD in 1 structure; the first of them:

  • 6A05 · Structure of psting complex · 1YD A403 · binds SER162, TYR163, GLY166, TYR167, ARG238, VAL239, TYR240, GLU260 and 12 more

Residues it binds most

TYR 1, THR 1, ARG 1, GLY 1, PRO 1, SER 1, VAL 1, GLU 1 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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