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Ligand · 1X4

1X4 · 2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose

1X4, 2,3-dideoxy-5-O-phosphono-alpha-D-ribofuranose (C5 H11 O6 P, 198.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
1X4
Formula
C5 H11 O6 P
Class
sugar
Structures
6
PDB entries
3

Binding sites

1X4 in 6 structures; the first of them:

  • 4LR9 · Phosphopentomutase S154A variant soaked with 2,3-dideoxyribose 5-phosphate · 1X4 A405 · binds ALA130, SER131, GLY132, ALA154, ASP156, VAL158, GLN160, ILE195 and 2 more
  • 4LRB · Phosphopentomutase S154G variant soaked with 2,3-dideoxyribose 5-phosphate · 1X4 A404 · binds ALA130, SER131, GLY132, TYR152, ASP156, VAL158, GLN160, ILE195 and 2 more
  • 4LRE · Phosphopentomutase soaked with 2,3-dideoxyribose 5-phosphate · 1X4 A404 · binds ALA130, SER131, GLY132, TYR152, SER154, ASP156, VAL158, GLN160 and 3 more
  • 4LR9 · Phosphopentomutase S154A variant soaked with 2,3-dideoxyribose 5- phosphate · 1X4 A405 · binds ALA130, SER131, GLY132, ALA154, ASP156, VAL158, GLN160, ILE195 and 2 more
  • 4LRB · Phosphopentomutase S154G variant soaked with 2,3-dideoxyribose 5- phosphate · 1X4 A404 · binds ALA130, SER131, GLY132, TYR152, ASP156, VAL158, GLN160, ILE195 and 2 more
  • 4LRE · Phosphopentomutase soaked with 2,3-dideoxyribose 5-phosphate · 1X4 A404 · binds ALA130, SER131, GLY132, TYR152, SER154, ASP156, VAL158, GLN160 and 3 more

Residues it binds most

ARG 6, ALA 6, SER 6, ASP 6, GLN 6, GLY 6, ILE 6, VAL 6, TYR 4 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • GOL · Glycerol
  • ACT · Acetate ion

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