GL1X · GenesisL1 explorer

Ligand · 1J1

1J1 · N~6~-[(2R)-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]-L-lysine

1J1, N~6~-[(2R)-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]-L-lysine (C11 H19 N3 O3, 241.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
1J1
Formula
C11 H19 N3 O3
Class
ligand
Structures
4
PDB entries
2

Binding sites

1J1 in 4 structures; the first of them:

  • 4J49 · PylD holoenzyme soaked with L-lysine-Ne-D-ornithine · 1J1 B902 · binds LEU3, LEU4, PRO52, VAL53, GLY58, ILE59, ILE60, PHE63 and 6 more
  • 4J4H · PylD in complex with pyrroline-carboxy-lysine and NADH · 1J1 A902 · binds ALA2, LEU3, LEU4, VAL51, PRO52, VAL53, GLY58, ILE59 and 9 more
  • 4J49 · Pyld holoenzyme soaked with L-lysine-ne-D-ornithine · 1J1 B902 · binds LEU3, LEU4, PRO52, VAL53, GLY58, ILE59, ILE60, PHE63 and 6 more
  • 4J4H · Pyld in complex with pyrroline-carboxy-lysine and NADH · 1J1 A902 · binds ALA2, LEU3, LEU4, VAL51, PRO52, VAL53, GLY58, ILE59 and 9 more

Residues it binds most

LEU 10, ASP 10, ILE 10, PHE 10, PRO 10, VAL 10, ALA 10, ASN 10, GLY 10 (residue and the binding sites it lines).

Found with

  • NAI · 1,4-dihydronicotinamide adenine dinucleotide
  • MG · Magnesium ion
  • NA · Sodium ion
  • NAD · Nicotinamide-adenine-dinucleotide

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