GL1X · GenesisL1 explorer

Ligand · 1DF

1DF · 4-hydroxy-3-methoxy-5-nitrobenzoic acid

1DF, 4-hydroxy-3-methoxy-5-nitrobenzoic acid (C8 H7 N O6, 213.1 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
1DF
Formula
C8 H7 N O6
Class
ligand
Structures
8
PDB entries
4

Binding sites

1DF in 8 structures; the first of them:

  • 4NG3 · Crystal structure of 5-carboxyvanillate decarboxylase from Sphingomonas paucimobilis… · 1DF A402 · binds GLU7, LEU34, ARG45, THR76, ALA77, HIS173, SER192, ALA193 and 7 more
  • 4QRN · HIGH-RESOLUTION CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE (TARGET EFI-505250)… · 1DF A402 · binds GLU19, LEU47, TRP48, TYR51, ARG58, THR90, SER91, HIS188 and 8 more
  • 4QS5 · CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE LIGW2 FROM NOVOSPHINGOBIUM… · 1DF A402 · binds GLU19, LEU47, TRP48, TYR51, ARG58, THR90, SER91, HIS188 and 8 more
  • 4QS6 · CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE LIGW2 FROM NOVOSPHINGOBIUM… · 1DF A404 · binds GLU19, LEU47, TRP48, TYR51, ARG58, THR90, SER91, HIS188 and 9 more
  • 4NG3 · Crystal structure of 5-carboxyvanillate decarboxylase from sphingomonas paucimobilis… · 1DF A402 · binds GLU7, LEU34, ARG45, THR76, ALA77, HIS173, SER192, ALA193 and 7 more
  • 4QRN · High-resolution crystal structure of 5-carboxyvanillate decarboxylase (target efi-505250)… · 1DF A402 · binds GLU19, LEU47, TRP48, TYR51, ARG58, THR90, SER91, HIS188 and 8 more
  • 4QS5 · Crystal structure of 5-carboxyvanillate decarboxylase LIGW2 from novosphingobium… · 1DF A402 · binds GLU19, LEU47, TRP48, TYR51, ARG58, THR90, SER91, HIS188 and 8 more
  • 4QS6 · Crystal structure of 5-carboxyvanillate decarboxylase LIGW2 from novosphingobium… · 1DF A404 · binds GLU19, LEU47, TRP48, TYR51, ARG58, THR90, SER91, HIS188 and 9 more

Residues it binds most

ARG 36, HIS 36, TYR 36, ALA 36, GLU 36, LEU 36, MET 36, SER 36, THR 36, ASN 28 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • CL · Chloride ion
  • GOL · Glycerol
  • ACT · Acetate ion
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.