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Ligand · 1D2

1D2 · Cyclododecyl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside

1D2, Cyclododecyl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside (C20 H39 N O3, 341.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
1D2
Formula
C20 H39 N O3
Class
ligand
Structures
2
PDB entries
1

Binding sites

1D2 in 2 structures; the first of them:

  • 2WI9 · Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase · 1D2 A1409 · binds LEU93, GLU94, VAL179, ILE239, VAL242, ALA243, GLU246, THR247 and 3 more
  • 2WI9 · Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase · 1D2 A1409 · binds LEU93, GLU94, VAL179, ILE239, VAL242, ALA243, GLU246, THR247 and 3 more

Residues it binds most

VAL 4, GLU 4, THR 4, ILE 4, ALA 4, MET 2, LEU 2, PHE 2 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • SO4 · Sulfate ion

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