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Ligand · 18D

18D · 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid

18D, 3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid (C12 H21 N O9, 323.3 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5…

Component
18D
Formula
C12 H21 N O9
Class
sugar
Structures
6
PDB entries
3

Binding sites

18D in 6 structures; the first of them:

  • 2WGT · Structure of human adenovirus serotype 37 fibre head in complex with a sialic acid… · 18D A1366 · binds TYR312, PRO317, ASP318, PRO320, LYS345, TYR308, GLY309, THR310 and 2 more
  • 4K6V · Crystal structure of Ad37 fiber knob in complex with trivalent sialic acid inhibitor… · 18D A402 · binds TYR312, PRO317, ASP318, PRO320, LYS345, TYR308, GLY309, THR310 and 2 more
  • 4K6W · Crystal structure of Ad37 fiber knob in complex with trivalent sialic acid inhibitor… · 18D A401 · binds TYR312, PRO317, ASP318, PRO320, LYS345, TYR308, GLY309, THR310 and 2 more
  • 2WGT · Structure of human adenovirus serotype 37 fibre head in complex with a sialic acid… · 18D A1366 · binds TYR312, PRO317, ASP318, PRO320, LYS345, TYR308, GLY309, THR310 and 2 more
  • 4K6V · Crystal structure of AD37 fiber knob in complex with trivalent sialic acid inhibitor… · 18D A402 · binds TYR312, PRO317, ASP318, PRO320, LYS345, TYR308, GLY309, THR310 and 2 more
  • 4K6W · Crystal structure of AD37 fiber knob in complex with trivalent sialic acid inhibitor… · 18D A401 · binds TYR312, PRO317, ASP318, PRO320, LYS345, TYR308, GLY309, THR310 and 2 more

Residues it binds most

PRO 18, TYR 18, ASP 18, GLY 18, LYS 18, SER 18, THR 18, VAL 18 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • ACT · Acetate ion
  • 1P0 · 2,2',2''-[nitrilotris(methanediyl-1H-1,2,3-triazole-4,1-diyl)]triethanol
  • 1P4 · 3,3',3''-[nitrilotris(methanediyl-1H-1,2,3-triazole-4,1-diyl)]tripropan-1-ol
  • MG · Magnesium ion
  • NA · Sodium ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol

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