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Ligand · 12D

12D · 2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate)

12D, 2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate) (C16 H16 N8 O16 P2, 638.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with…

Component
12D
Formula
C16 H16 N8 O16 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

12D in 4 structures; the first of them:

  • 3AR6 · Calcium pump crystal structure with bound TNP-ADP and TG in the absence of calcium · 12D A1002 · binds THR353, GLU439, PHE487, ARG489, LYS492, MET494, LYS515, GLY516 and 6 more
  • 3B5J · Crystal Structures of the S504A Mutant of an Isolated ABC-ATPase in Complex with TNP-ADP · 12D A708 · binds TYR477, PRO482, ILE484, ARG503, ALA504, GLY505, SER506, GLY507 and 6 more
  • 3AR6 · Calcium pump crystal structure with bound tnp-ADP and tg in the absence of calcium · 12D A1002 · binds THR353, GLU439, PHE487, ARG489, LYS492, MET494, LYS515, GLY516 and 6 more
  • 3B5J · Crystal structures of the S504A mutant of an isolated ABC-ATPase in complex with tnp-ADP · 12D A708 · binds TYR477, PRO482, ILE484, ARG503, ALA504, GLY505, SER506, GLY507 and 6 more

Residues it binds most

ARG 4, GLY 4, LYS 4, THR 4, ALA 4, GLU 4, SER 2, TYR 2, ILE 2, LEU 2 (residue and the binding sites it lines).

Found with

  • PTY · Phosphatidylethanolamine
  • TG1 · Octanoic acid [3S-[3alpha, 3abeta, 4alpha, 6beta, 6abeta, 7beta, 8alpha(z), 9balpha]]-6-(acetyloxy)-2,3, -3A,4,5,6,6A,7,8,9B-decahydro-3,3A-dihydroxy-3,6,9-trimethyl-8-[(2-methyl-1-oxo-2-butenyl)oxy]-2-oxo-4-(1-oxobutoxy)-azuleno[4,5-b]furan-7-yl ester
  • MG · Magnesium ion
  • NA · Sodium ion
  • ACE · Acetyl group

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