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Ligand · 10Y

10Y · (9Z)-11-{(2R,3S)-3-[(2Z)-pent-2-en-1-yl]oxiran-2-yl}undec-9-enoic acid

10Y, (9Z)-11-{(2R,3S)-3-[(2Z)-pent-2-en-1-yl]oxiran-2-yl}undec-9-enoic acid (C18 H30 O3, 294.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
10Y
Formula
C18 H30 O3
Class
ligand
Structures
4
PDB entries
2

Binding sites

10Y in 4 structures; the first of them:

  • 4H69 · Crystal Structure of the Allene Oxide Cyclase 2 from Physcomitrella patens complexed with… · 10Y A202 · binds GLU18, PRO27, VAL50, PHE52, ASN54, CYS72, TYR86, TYR90 and 7 more
  • 4H6B · Structural basis for allene oxide cyclization in moss · 10Y A202 · binds GLU18, PRO27, PHE29, VAL51, PHE53, ASN55, CYS73, TYR87 and 7 more
  • 4H69 · Crystal structure of the allene oxide cyclase 2 from physcomitrella patens complexed with… · 10Y A202 · binds GLU18, PRO27, VAL50, PHE52, ASN54, CYS72, TYR86, TYR90 and 7 more
  • 4H6B · Structural basis for allene oxide cyclization in moss · 10Y A202 · binds GLU18, PRO27, PHE29, VAL51, PHE53, ASN55, CYS73, TYR87 and 7 more

Residues it binds most

TYR 14, PHE 14, PRO 14, LEU 12, ASN 14, VAL 14, CYS 12, GLU 12, ARG 8, ILE 8 (residue and the binding sites it lines).

Found with

  • PO4 · Phosphate ion
  • 10X · (9Z)-11-{(2S,3S)-3-[(2Z)-pent-2-en-1-yl]oxiran-2-yl}undec-9-enoic acid
  • HEZ · Hexane-1,6-diol
  • IPA · Isopropyl alcohol

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