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Ligand · 0YN

0YN · 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol

0YN, 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol (C13 H17 N3 O S, 263.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å…

Component
0YN
Formula
C13 H17 N3 O S
Class
ligand
Structures
4
PDB entries
2

Binding sites

0YN in 4 structures; the first of them:

  • 4HCY · Structure of a eukaryotic thiaminase-I bound to the thiamin analogue 3-deazathiamin · 0YN A401 · binds PHE13, TYR15, TYR53, ASP68, TYR116, CYS118, PHE158, TYR230 and 3 more
  • 4MHW · Crystal structure of ThiT with small molecule BAT-25 · 0YN A201 · binds TRP34, ILE36, GLU38, GLU84, TYR85, LYS121, TYR122, HIS125 and 8 more
  • 4HCY · Structure of a eukaryotic thiaminase-I bound to the thiamin analogue 3-deazathiamin · 0YN A401 · binds PHE13, TYR15, TYR53, ASP68, TYR116, CYS118, PHE158, TYR230 and 3 more
  • 4MHW · Crystal structure of thit with small molecule bat-25 · 0YN A201 · binds TRP34, ILE36, GLU38, GLU84, TYR85, LYS121, TYR122, HIS125 and 8 more

Residues it binds most

TYR 16, PHE 14, ASP 12, GLU 16, CYS 12, LEU 8, THR 8, TRP 4, ALA 4, ASN 4 (residue and the binding sites it lines).

Found with

  • BNG · nonyl beta-D-glucopyranoside
  • 1PE · Pentaethylene glycol
  • P6G · Hexaethylene glycol
  • PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol
  • PEG · Di(hydroxyethyl)ether
  • PG0 · 2-(2-methoxyethoxy)ethanol
  • PG4 · Tetraethylene glycol

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