GL1X · GenesisL1 explorer

Ligand · 0TF

0TF · N~6~-D-ornithyl-L-lysine

0TF, N~6~-D-ornithyl-L-lysine (C11 H24 N4 O3, 260.3 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
0TF
Formula
C11 H24 N4 O3
Class
ligand
Structures
6
PDB entries
3

Binding sites

0TF in 6 structures; the first of them:

  • 4FFM · PylC in complex with L-lysine-Ne-D-ornithine (cocrystallized with L-lysine-Ne-D-ornithine) · 0TF A901 · binds LYS10, LEU11, GLN12, VAL70, ASN71, GLU72, SER169, GLU171 and 8 more
  • 4FFP · PylC in complex with L-lysine-Ne-D-ornithine (cocrystallized with L-lysine and… · 0TF A901 · binds LYS10, LEU11, GLN12, VAL70, ASN71, GLU72, SER136, SER137 and 10 more
  • 4J4B · PylD in complex with L-lysine-Ne-D-ornithine and NADH · 0TF A904 · binds ALA2, LEU3, LEU4, VAL51, PRO52, VAL53, GLY58, ILE59 and 9 more
  • 4FFM · Pylc in complex with L-lysine-ne-D-ornithine (cocrystallized with L… · 0TF A901 · binds LYS10, LEU11, GLN12, VAL70, ASN71, GLU72, SER169, GLU171 and 8 more
  • 4FFP · Pylc in complex with L-lysine-ne-D-ornithine (cocrystallized with L- lysine and… · 0TF A901 · binds LYS10, LEU11, GLN12, VAL70, ASN71, GLU72, SER136, SER137 and 10 more
  • 4J4B · Pyld in complex with L-lysine-ne-D-ornithine and NADH · 0TF A904 · binds ALA2, LEU3, LEU4, VAL51, PRO52, VAL53, GLY58, ILE59 and 9 more

Residues it binds most

GLU 4, LEU 8, ASP 8, PRO 8, SER 4, VAL 8, ALA 4, ASN 8, GLN 4, ILE 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ADP · Adenosine-5'-diphosphate
  • ATP · Adenosine-5'-triphosphate
  • NAI · 1,4-dihydronicotinamide adenine dinucleotide
  • NA · Sodium ion
  • PO4 · Phosphate ion

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