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Ligand · 0L6

0L6 · 5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)

0L6, 5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate) (C14 H25 N4 O13 P3, 550.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
0L6
Formula
C14 H25 N4 O13 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

0L6 in 2 structures; the first of them:

  • 4DFM · Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in… · 0L6 A901 · binds ARG573, ASP610, TYR611, SER612, GLN613, ILE614, GLU615, HIS639 and 10 more
  • 4DFM · Crystal structure of the large fragment of DNA polymerase I from thermus aquaticus in… · 0L6 A901 · binds ARG573, ASP610, TYR611, SER612, GLN613, ILE614, GLU615, HIS639 and 10 more

Residues it binds most

ARG 2, ASP 2, DC 2, DDG 2, DG 2, GLN 2, GLU 2, HIS 2, ILE 2, LYS 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • EDO · 1,2-ethanediol
  • FMT · Formic acid

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