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Ligand · 0L5

0L5 · 2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate)

0L5, 2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate) (C24 H40 N3 O16 P3, 719.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
0L5
Formula
C24 H40 N3 O16 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

0L5 in 2 structures; the first of them:

  • 4DFK · large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex… · 0L5 A901 · binds ARG573, ARG587, ASP610, TYR611, SER612, GLN613, ILE614, GLU615 and 14 more
  • 4DFK · Large fragment of DNA polymerase I from thermus aquaticus in a closed ternary complex… · 0L5 A901 · binds ARG573, ARG587, ASP610, TYR611, SER612, GLN613, ILE614, GLU615 and 14 more

Residues it binds most

ARG 2, ASP 2, PHE 2, TYR 2, ALA 2, DA 2, DG 2, DOC 2, GLN 2, GLU 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • EDO · 1,2-ethanediol
  • FMT · Formic acid

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