GL1X · GenesisL1 explorer

Ligand · 0L4

0L4 · 5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine

0L4, 5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine (C16 H24 N5 O12 P3, 571.3 g/mol), in the MolNFT structures on…

Component
0L4
Formula
C16 H24 N5 O12 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

0L4 in 2 structures; the first of them:

  • 4DF8 · Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a… · 0L4 A901 · binds ARG573, ASP610, TYR611, SER612, GLN613, ILE614, GLU615, HIS639 and 10 more
  • 4DF8 · Crystal structure of the large fragment of DNA polymerase I from thermus aquaticus in a… · 0L4 A901 · binds ARG573, ASP610, TYR611, SER612, GLN613, ILE614, GLU615, HIS639 and 10 more

Residues it binds most

ARG 2, ASP 2, TYR 2, DG 2, DOC 2, DT 2, GLN 2, GLU 2, HIS 2, ILE 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • FMT · Formic acid

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