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Ligand · 0DN

0DN · 5'-deoxy-5'-fluorothymidine

0DN, 5'-deoxy-5'-fluorothymidine (C10 H13 F N2 O4, 244.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
0DN
Formula
C10 H13 F N2 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

0DN in 2 structures; the first of them:

  • 3UXM · Structure Guided Development of Novel Thymidine Mimetics targeting Pseudomonas aeruginosa… · 0DN A800 · binds GLU12, GLU39, PRO40, ARG50, LEU54, MET70, ARG74, ARG96 and 6 more
  • 3UXM · Structure guided development of novel thymidine mimetics targeting pseudomonas aeruginosa… · 0DN A800 · binds GLU12, GLU39, PRO40, ARG50, LEU54, MET70, ARG74, ARG96 and 6 more

Residues it binds most

ARG 8, PHE 8, GLU 8, ALA 8, GLN 8, LEU 8, MET 8, PRO 8, THR 8, TYR 8 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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